A major challenge in cancer treatment is that a cancerous tumour often consists of areas with very different properties. Each responds differently when the same treatment is delivered. The diagnosis and treatment of choice is often based on the biopsy results, usually done by taking small pieces of tissue from the tumour. If a tumour has areas with properties that differ far from the tissue sample on which the diagnosis is based on, it is most probable that the treatment will not eradicate the tumour completely.
The MATISSE project aims to combine several nanotechnology elements into a new, diagnostic tool of multiple areas in the same tumour, thereby facilitating a more informed selection of a treatment regime that is more likely to eradicate the entire tumour. This will be achieved by the development of a needle inserted into tumours for harvesting the molecular content from the tumour cells. Such approach may potentially eliminate the need for complex procedures to collect the tumour samples and to allow analysis of many areas in the same tumour.
Inside the needle, the molecular content will be harvested using a technique called electroporation. It is based on forming pores in the cell membranes by applying an electric field to subsequently release the molecular content. The molecular content is then extracted from the tissue using the needle and transferred to a centrifugal microfluidic device that separates the relevant biomolecules, namely proteins and RNA, from the rest of the sample. These biomolecules are then analysed promptly to provide the diagnosis. The centrifugal microfluidic device can analyse several samples in parallel and thereby speeds up the process of diagnosis. Based on the diagnosis, the surface of therapeutic nanoparticles will be tailored to bind specifically to biomolecules discovered in the analysis. Thereby, therapeutics may hopefully reach all parts of the tumour and significantly increase the chances of successful therapy.
Intratumor heterogeneity is a major challenge preventing the wide-spread adaptation of a personalized medicine. The objective of this proposal is to develop a complementary set of beyond state-of-the-art, nanotechnology-driven tools for effective diagnostics of intratumor heterogeneity and subsequent therapy with tailored nanoparticles. The methods include (i) collection of molecular biopsies at improved spatial resolution (~100 µm) by tissue permeabilisation with electroporation, (ii) automation of sample preparation on electroporated extracts (RNA and proteins extraction) using centrifugal microfluidics and (iii) application of therapeutic gold and silica nanoparticles addressing the tumor subclonality. The hypothesis behind the MATISSE project is that the combination of the proposed technologies will for the first time enable dissecting molecular cartography and heterogeneity of solid tumours addressable by nanoparticle drugs. To test the hypothesis, international consortium of experts in engineering, nanotechnology, medicine, biochemistry, and machine learning will jointly tackle the following specific challenges: 1) development of a novel e-biopsy device for molecular harvesting in vivo; 2) determination of the electric pulse parameters for RNA and protein extraction from tumour model in mice and excised human skin and internal tumours; 3) development of a microfluidic technology for interfacing e-biopsy devices and laboratory instrumentation that ensures integrity of data collection during biopsies analysis; 4) development of nanoparticles combinations to address the heterogeneity of the 4T1 model tested in vivo. The project involves partners from 4 countries (Project leader: Tel Aviv University). SINTEF will focus on the development of a centrifugal microfluidic device for automation of sample preparation (RNA and protein extraction), interfacing of e-biopsy devices with other instrumentation to ensure integrity of data collection during biopsies analysis.